Download the list of epitopes in COVID-19 infected or vaccinated individuals
Reliable Identification of SARS-CoV-2-Specific T-Cell Responses
Explore T-Cell Immunity in COVID-19
A deeper understanding of virus-specific T-cell responses to COVID-19 is needed to evaluate vaccine candidates, explore long-term immunity, predict patients at risk, and even prepare for the next pandemic.
Dextramer® technology can help you monitor and characterize SARS-CoV-2- specific CD4+ and CD8+ T cells in blood, without missing rare or low-affinity cells, in an easy and reproducible way.
Learn More about T Cells and COVID-19
Frequencies of SARS-CoV-2-specific CD8+ T cells detected in PBMCs at different time points from a vaccinated convalescent donor with a SARS-CoV-2 MHC I Panel of Non-Spike Epitopes.
SARS-CoV-2 Dextramer® Panels
We provide SARS-CoV-2 Dextramer® reagents in panels targeting Spike or Non-Spike epitopes, each with a selection of validated T-cell epitopes.
Alternatively, select your own custom panel based on our selection of SARS-CoV-2 Dextramer® reagents, or order individual Dextramer® reagents.
The immunodominant SARS-CoV-2 specific T-cell epitopes listed below are known to be present in large populations, based on publications and in-house knowledge, enabling researchers to monitor T-cell immunity across COVID-19 variants.
SARS-CoV-2 MHC I Panel of Spike Epitopes
|
Allele |
Peptide |
Antigen |
Delta |
Omicron BA 2.12.1 |
Omicron BA.4 |
Omicron BA. 5 |
|
A*0101 |
LTDEMIAQY |
S |
|
|
|
|
|
A*0101 |
WTAGAAAYY |
S |
|
|
|
|
|
A*0201 |
YLQPRTFLL |
S |
|
|
|
|
|
A*0201 |
FIAGLIAIV |
S |
|
|
|
|
|
A*0301 |
KCYGVSPTK |
S |
|
|
|
|
|
A*0301 |
GVYFASTEK |
S |
|
GVYFASIEK |
|
|
|
A*1101 |
RLFRKSNLK |
S |
|
|
|
|
|
A*1101 |
KCYGVSPTK |
S |
|
|
|
|
|
A*1101 |
GVYFASTEK |
S |
|
GVYFASIEK |
|
|
|
A*2402 |
QYIKWPWYI |
S |
|
|
|
|
|
A*2402 |
NYNYLYRLF |
S |
NYNYRYRLF |
|
NYNYRYRLF |
NYNYRYRLF |
|
B*0702 |
SPRRARSVA |
S |
SRRRARSVA |
SHRRARSVA |
SHRRARSVA |
SHRRARSVA |
|
B*0702 |
APHGVVFL |
S |
|
|
|
|
|
B*3501 |
QPTESIVRF |
S |
|
|
|
|
|
B*3501 |
LPFNDGVYF |
S |
|
|
|
|
|
B*3501 |
IPFAMQMAY |
S |
|
|
|
|
Spike-specific CD8+ T-cell epitopes in the SARS-CoV-2 Dextramer® Panels, and the conservation of these epitopes across the SARS-CoV-2 Delta (B.1.617.2) and Omicron (BA 2.12.1, BA. 4, BA. 5) variants. All epitopes are conserved in the reference strain (NC_045512). Mutations in the epitope are shown in red. Learn more in this Application Note.
SARS-CoV-2 MHC I Panel of Non-Spike Epitopes
|
Allele |
Peptide |
Antigen |
Delta |
Omicron |
Omicron BA.4 |
Omicron BA. 5 |
|
A*0201 |
LLLDRLNQL |
N |
|
|
|
|
|
A*0301 |
KTFPPTEPK |
N |
|
|
|
|
|
A*1101 |
KTFPPTEPK |
N |
|
|
|
|
|
B*0702 |
SPRWYFYYL |
N |
|
|
|
|
|
A*0101 |
FTSDYYQLY |
ORF3a |
|
|
|
|
|
A*0201 |
LLYDANYFL |
ORF3a |
|
|
|
|
|
A*2402 |
VYFLQSINF |
ORF3a |
|
|
|
|
|
A*0101 |
TTDPSFLGRY |
ORF1ab |
TTDLSFLGRY |
|
|
|
|
A*0201 |
ALWEIQQVV |
ORF1ab |
|
|
|
|
|
A*0301 |
VVYRGTTTYK |
ORF1ab |
|
|
|
|
|
A*1101 |
ASMPTTIAK |
ORF1ab |
|
|
|
|
|
A*2402 |
VYIGDPAQL |
ORF1ab |
|
|
|
|
|
B*0702 |
IPRRNVATL |
ORF1ab |
|
|
|
|
Non-Spike-specific CD8+ T-cell epitopes in the SARS-CoV-2 Dextramer® Panels, and the conservation of these epitopes across the SARS-CoV-2 Delta (B.1.617.2), and Omicron (BA 2.12.1, BA. 4, BA. 5) variants. Green = no mutations in epitope, Red = mutations in epitope. All epitopes are conserved in the reference strain (NC_045512). Mutations in the epitope are shown in red. Learn more in this Application Note.
SARS-CoV-2 Dextramer® Reagents
All SARS-CoV-2 Dextramer® reagents are available for detection of antigen-specific T cells by in-situ staining, flow cytometry, NGS or single-cell multi-omics. All specificities listed below are also available as MHC Monomers.
MHC I or MHC II Dextramer® - for identification of antigen-specific T cells by flow cytometry
dCODE Dextramer® (HiT) - for bulk analysis of antigen-specific T cells by PCR and NGS
dCODE Dextramer® (10x) - for single-cell multi-omic analysis of antigen-specific T cells to combine information on TCR recognition, TCR sequencing, and gene expression using 10x Chromium Single Cell analysis.
dCODE Dextramer® (RiO) - for single-cell multi-omic analysis of antigen-specific T cells to combine information on TCR recognition, TCR sequencing, and gene expression using BD RhapsodyTM Single-Cell Analysis.
MHC I or MHC II Monomers – for flexible investigation of antigen-specific T cells
MHC Dextramer® Reagents
dCODE Dextramer® Reagents
SARS-CoV-2 MHC I Reagents
|
Catalogue Number |
Allele |
Peptide |
Antigen |
|
WB05946 |
A*0201 |
SLVKPSFYV |
E |
|
WB05950 |
A*0201 |
KLLEQWNLV |
M |
|
WH05882 |
B*0702 |
LPKEITVAT |
M |
|
WD05859 |
A*1101 |
LSYFIASFR |
M |
|
WB03848 |
A*0201 |
TLACFVLAAV |
M |
|
WH05758 |
B*0702 |
APSASAFFGM |
N |
|
WD05981 |
A*1101 |
ATEGALNTPK |
N |
|
WC05981 |
A*0301 |
ATEGALNTPK |
N |
|
WB05751 |
A*0201 |
GMSRIGMEV |
N |
|
WB05848 |
A*0201 |
ILLNKHIDA |
N |
|
WH05888 |
B*0702 |
KPRQKRTAT |
N |
|
WC05754 |
A*0301 |
KTFPPTEPK |
N |
|
WD05754 |
A*1101 |
KTFPPTEPK |
N |
|
WB05977 |
A*0201 |
LLLDRLNQL |
N |
|
WL05761 |
B*4403 |
MEVTPSGTW |
N |
|
WJ05988 |
B*2705 |
QRNAPRITF |
N |
|
JD05842 |
B*0702 |
SPRWYFYYL |
N |
|
WK05759 |
B*3501 |
TPSGTWLTY |
N |
|
WB06025 |
A*0201 |
ALWEIQQVV |
ORF1ab |
|
WD06030 |
A*1101 |
ASMPTTIAK |
ORF1ab |
|
WD05983 |
A*1101 |
ATSRTLSYYK |
ORF1ab |
|
WA06028 |
A*0101 |
DTDFVNEFY |
ORF1ab |
|
WB06034 |
A*0201 |
FLLPSLATV |
ORF1ab |
|
WA06081 |
A*0101 |
GTDLEGNFY |
ORF1ab |
|
WA06115 |
A*0101 |
HTTDPSFLGRY |
ORF1ab |
|
WB05974 |
A*0201 |
ILFTRFFYV |
ORF1ab |
|
WH06032 |
B*0702 |
IPRRNVATL |
ORF1ab |
|
WB06036 |
A*0201 |
KLWAQCVQL |
ORF1ab |
|
WC06082 |
A*0301 |
KTIQPRVEK |
ORF1ab |
|
WA06029 |
A*0101 |
PTDNYITTY |
ORF1ab |
|
WB06043 |
A*0201 |
RTIKVFTTV |
ORF1ab |
|
WD06083 |
A*1101 |
SAFAMMFVK |
ORF1ab |
|
WL05990 |
B*4402 |
SEFSSLPSY |
ORF1ab |
|
WD05982 |
A*1101 |
STFNVPMEK |
ORF1ab |
|
WA06115 |
A*0101 |
TTDPSFLGRY |
ORF1ab |
|
WC05978 |
A*0301 |
VVYRGTTTYK |
ORF1ab |
|
WF05984 |
A*2402 |
VYIGDPAQL |
ORF1ab |
|
WB06039 |
A*0201 |
YLFDESGEFKL |
ORF1ab |
|
WC06082 |
A*0301 |
KTIQPRVEK |
ORF1ab |
|
WA06027 |
A*0101 |
CTDDNALAYY |
ORF1ab |
|
WB05948 |
A*0201 |
ALSKGVHFV |
ORF3a |
|
WA05973 |
A*0101 |
FTSDYYQLY |
ORF3a |
|
WB05939 |
A*0201 |
LLYDANYFL |
ORF3a |
|
WF06031 |
A*2402 |
VYFLQSINF |
ORF3a |
|
WB05949 |
A*0201 |
HLVDFQVTI |
ORF6 |
|
WH06103 |
B*0702 |
APHGVVFL |
S |
|
WB05825 |
A*0201 |
FIAGLIAIV |
S |
|
WB05975 |
A*0201 |
FLHVTYVPA |
S |
|
WC05853 |
A*0301 |
GVYFASTEK |
S |
|
WD05853 |
A*1101 |
GVYFASTEK |
S |
|
WD05861 |
A*1101 |
GVYYHKNNK |
S |
|
WK06107 |
B*3501 |
IPFAMQMAY |
S |
|
WD05979 |
A*1101 |
KCYGVSPTK |
S |
|
WC05979 |
A*0301 |
KCYGVSPTK |
S |
|
WA05846 |
A*0101 |
LTDEMIAQY |
S |
|
WI05885 |
B*0801 |
MIAQYTSAL |
S |
|
WH05885 |
B*0702 |
MIAQYTSAL |
S |
|
WC05857 |
A*0301 |
MTSCCSCLK |
S |
|
WD05857 |
A*1101 |
MTSCCSCLK |
S |
|
WB05850 |
A*0201 |
NLNESLIDL |
S |
|
WF06097 |
A*2402 |
NYNYLYRLF |
S |
|
WC05856 |
A*0301 |
QIYKTPPIK |
S |
|
WK06104 |
B*3501 |
QPTESIVRF |
S |
|
WF05952 |
A*2402 |
QYIKWPWYI |
S |
|
WD05854 |
A*1101 |
RLFRKSNLK |
S |
|
WC05854 |
A*0301 |
RLFRKSNLK |
S |
|
WB05976 |
A*0201 |
RLITGRLQSL |
S |
|
WB05750 |
A*0201 |
RLNEVAKNL |
S |
|
WB05914 |
A*0201 |
RLQSLQTYV |
S |
|
WH05879 |
B*0702 |
SPRRARSVA |
S |
|
WB05947 |
A*0201 |
TLDSKTQSL |
S |
|
WD05855 |
A*1101 |
TLKSFTVEK |
S |
|
WC05855 |
A*0301 |
TLKSFTVEK |
S |
|
WB05823 |
A*0201 |
VLNDILSRL |
S |
|
WB05849 |
A*0201 |
VVFLHVTYV |
S |
|
WA05847 |
A*0101 |
WTAGAAAYY |
S |
|
WB05824 |
A*0201 |
YLQPRTFLL |
S |
|
WK06106 |
B*3501 |
LPFNDGVYF |
S |
SARS-CoV-2 MHC II Reagents
|
Catalogue Number |
Allele |
Peptide |
Antigen |
|
FA10172 |
DRB1*0101 |
FYVYSRVKNLNSSRV |
E |
|
FB10172 |
DRB1*0401 |
FYVYSRVKNLNSSRV |
E |
|
FE10172 |
DRB1*0701 |
FYVYSRVKNLNSSRV |
E |
|
FA10170 |
DRB1*0101 |
LLLLDRLNQLESKMS |
N |
|
FA10171 |
DRB1*0101 |
LEASFNYLKSPNFSK |
ORF1ab |
|
FE10173 |
DRB1*0101 |
ESPFVMMSAPPAQYE |
ORF1ab |
|
FA10174 |
DRB1*0101 |
EEIAIILASFSASTS |
ORF1ab |
|
FA10175 |
DRB1*0101 |
EAFEKMVSLLSVLLS |
ORF1ab |
|
FB10171 |
DRB1*0401 |
LEASFNYLKSPNFSK |
ORF1ab |
|
FB10174 |
DRB1*0401 |
EEIAIILASFSASTS |
ORF1ab |
|
FB10175 |
DRB1*0401 |
EAFEKMVSLLSVLLS |
ORF1ab |
|
FE10171 |
DRB1*0701 |
LEASFNYLKSPNFSK |
ORF1ab |
|
FE10174 |
DRB1*0701 |
EEIAIILASFSASTS |
ORF1ab |
|
FE10175 |
DRB1*0701 |
EAFEKMVSLLSVLLS |
ORF1ab |
|
FA10157 |
DRB1*0101 |
QLIRAAEIRASANLAATK |
S |
|
FA10160 |
DRB1*0101 |
GAALQIPFAMQMAYRF |
S |
|
FA10161 |
DRB1*0101 |
MAYRFNGIGVTQNVLY |
S |
|
FA10162 |
DRB1*0101 |
QALNTLVKQLSSNFGAI |
S |
|
FA10164 |
DRB1*0101 |
SASFSTFKCYGVSPTKL |
S |
|
FA10165 |
DRB1*0101 |
KSFTVEKGIYQTSNFRVQ |
S |
|
FA10167 |
DRB1*0101 |
HWFVTQRNFYEPQII |
S |
|
FA10168 |
DRB1*0101 |
QSIIAYTMSLGAENSVAY |
S |
|
FA10169 |
DRB1*0101 |
DSLSSTASALGKLQDVV |
S |
|
FB10157 |
DRB1*0401 |
QLIRAAEIRASANLAATK |
S |
|
FB10161 |
DRB1*0401 |
MAYRFNGIGVTQNVLY |
S |
|
FB10162 |
DRB1*0401 |
QALNTLVKQLSSNFGAI |
S |
|
FB10165 |
DRB1*0401 |
KSFTVEKGIYQTSNFRVQ |
S |
|
FB10167 |
DRB1*0401 |
HWFVTQRNFYEPQII |
S |
|
FB10168 |
DRB1*0401 |
QSIIAYTMSLGAENSVAY |
S |
|
FE10157 |
DRB1*0701 |
QLIRAAEIRASANLAATK |
S |
|
FE10160 |
DRB1*0701 |
GAALQIPFAMQMAYRF |
S |
|
FE10161 |
DRB1*0701 |
MAYRFNGIGVTQNVLY |
S |
|
FE10164 |
DRB1*0701 |
SASFSTFKCYGVSPTKL |
S |
|
FE10165 |
DRB1*0701 |
KSFTVEKGIYQTSNFRVQ |
S |
|
FE10166 |
DRB1*0701 |
VKQIYKTPPIKDFGGFNF |
S |
|
FE10167 |
DRB1*0701 |
HWFVTQRNFYEPQII |
S |
|
FE10168 |
DRB1*0701 |
QSIIAYTMSLGAENSVAY |
S |
Order your SARS-CoV-2 Panels
Please contact our application specialist if you would like to discuss your research.
Please include information on:
- Your preferred epitope(s) and alleles for MHC Dextramer®, dCODE Dextramer®, or MHC Monomer
- Your preferred reagent format: MHC Dextramer® or dCODE Dextramer®
- Your preferred dye (for MHC Dextramer®): PE, APC, FITC, or None
- Test size:
o MHC Dextramer®, select between 50 or 150 tests
o dCODE Dextramer®, select between 25, 50, or 150 tests
o MHC Monomers select between 20 µg (~50 tests), 100 µg (~250 tests), or 200 µg (~500 tests)
Published Mouse COVID-19 T-Cell Epitopes
Download the list of epitopes in COVID-19 infected genetically modified mice.
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